SRX147740
GSM929904: FAIRE MK Indiv-B-C; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
Umbilical cord blood
NA
NA

Attributes by original data submitter

Sample

source_name
Umbilical cord blood
cell type
Megakaryocytes
individual/replicate
Indiv-B + Indiv-C
f-seq parameter
8

Sequenced DNA Library

library_name
GSM929904: FAIRE_MK_Indiv-B-C
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30601131
Reads aligned (%)
98.9
Duplicates removed (%)
39.3
Number of peaks
2884 (qval < 1E-05)

hg19

Number of total reads
30601131
Reads aligned (%)
97.5
Duplicates removed (%)
39.4
Number of peaks
2767 (qval < 1E-05)

Base call quality data from DBCLS SRA