SRX147739
GSM929904: FAIRE MK Indiv-B-C; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
Umbilical cord blood
NA
NA

Attributes by original data submitter

Sample

source_name
Umbilical cord blood
cell type
Megakaryocytes
individual/replicate
Indiv-B + Indiv-C
f-seq parameter
8

Sequenced DNA Library

library_name
GSM929904: FAIRE_MK_Indiv-B-C
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28030270
Reads aligned (%)
99.3
Duplicates removed (%)
26.4
Number of peaks
2684 (qval < 1E-05)

hg19

Number of total reads
28030270
Reads aligned (%)
98.0
Duplicates removed (%)
26.6
Number of peaks
2505 (qval < 1E-05)

Base call quality data from DBCLS SRA