SRX147736
GSM929901: FAIRE CHRF 1 2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
CHRF-288-11
NA
NA

Attributes by original data submitter

Sample

source_name
Cell culture
cell type
CHRF-288-11
individual/replicate
Repl-1 + Repl-2
f-seq parameter
8

Sequenced DNA Library

library_name
GSM929901: FAIRE_CHRF_1_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41725150
Reads aligned (%)
98.8
Duplicates removed (%)
15.4
Number of peaks
19177 (qval < 1E-05)

hg19

Number of total reads
41725150
Reads aligned (%)
98.0
Duplicates removed (%)
15.4
Number of peaks
18763 (qval < 1E-05)

Base call quality data from DBCLS SRA