Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ceh-82

Cell type

Cell type Class
Larvae
Cell type
L1
NA
NA

Attributes by original data submitter

Sample

source_name
Snyder_F45C12.2_GFP_L1_rep2
strain
OP212(official name : OP212 genotype : unc-119(ed3); wgIs212(F45C12.2:TY1 EGFP FLAG; unc-119(+)) outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Dresden using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The F45C12.2::EGFP fusion protein is expressed in the correct F45C12.2 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the F45C12.2 transcription factor. made_by : Mihail Sarov )
developmental stage
fed L1
genotype
unc-119(ed3); wgIs212(F45C12.2:TY1 EGFP FLAG; unc-119(+))
Sex
hermaphrodite

Sequenced DNA Library

library_name
GSM929333: Snyder_F45C12.2_GFP_L1_rep2 extraction2_seq1 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

ce11

Number of total reads
5672599
Reads aligned (%)
33.7
Duplicates removed (%)
4.0
Number of peaks
3057 (qval < 1E-05)

ce10

Number of total reads
5672599
Reads aligned (%)
33.7
Duplicates removed (%)
4.0
Number of peaks
3055 (qval < 1E-05)

Base call quality data from DBCLS SRA