Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Gastric primary sample
NA
NA

Attributes by original data submitter

Sample

source_name
Gastric Primary Sample
tissue
Gastric Primary Sample
chip antibody
Input

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
16583307
Reads aligned (%)
90.8
Duplicates removed (%)
12.6
Number of peaks
2335 (qval < 1E-05)

hg19

Number of total reads
16583307
Reads aligned (%)
89.8
Duplicates removed (%)
13.4
Number of peaks
1919 (qval < 1E-05)

Base call quality data from DBCLS SRA