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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Tead4
wikigenes
PDBj
CellType: mESC derived haematopoietic progenitor
ATCC
MeSH
RIKEN BRC
SRX1472461
GSM1968747: FlkPlus Tead4; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Tead4
Cell type
Cell type Class
Pluripotent stem cell
Cell type
mESC derived haematopoietic progenitor
NA
NA
Attributes by original data submitter
Sample
source_name
Hemangioblast
strain
129
cell type
ES derived Hemangioblasts (FLK1+)
chip antibody
Abcam ab58310
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
As described in Wilson et al., Cell Stem Cell. 2010 Oct 8;7(4):532-44 According to Illumina TruSeq DNA Sample Prep Kit
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
28761414
Reads aligned (%)
86.2
Duplicates removed (%)
14.7
Number of peaks
2934 (qval < 1E-05)
mm9
Number of total reads
28761414
Reads aligned (%)
86.1
Duplicates removed (%)
14.8
Number of peaks
2945 (qval < 1E-05)
Base call quality data from
DBCLS SRA