SRX146535
GSM928461: MEF KO dox WCE; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse V19-OSKM Fibroblast, Utx-/Y
chip antibody
none
strain
V19-OSKM
doxycycline induction
DOX
genotype/variation
KO Utx-/Y

Sequenced DNA Library

library_name
GSM928461: MEF_KO_dox_WCE
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
9290924
Reads aligned (%)
91.9
Duplicates removed (%)
25.6
Number of peaks
370 (qval < 1E-05)

mm9

Number of total reads
9290924
Reads aligned (%)
91.6
Duplicates removed (%)
25.9
Number of peaks
378 (qval < 1E-05)

Base call quality data from DBCLS SRA