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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: iPS cells
ATCC
MeSH
RIKEN BRC
SRX146532
GSM928458: MEF KO WCE; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA
Attributes by original data submitter
Sample
source_name
Mouse V19-OSKM Fibroblast, Utx-/Y
chip antibody
none
strain
V19-OSKM
doxycycline induction
none
genotype/variation
KO Utx-/Y
Sequenced DNA Library
library_name
GSM928458: MEF_KO_WCE
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
7361959
Reads aligned (%)
91.4
Duplicates removed (%)
25.7
Number of peaks
331 (qval < 1E-05)
mm9
Number of total reads
7361959
Reads aligned (%)
91.1
Duplicates removed (%)
26.0
Number of peaks
323 (qval < 1E-05)
Base call quality data from
DBCLS SRA