Curated Sample Data


Genome
ce10
Antigen Class
TFs and others
Antigen
daf-12
Cell type Class
Larvae
Cell type
L3

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
Snyder_DAF12_GFP_L3_rep1
strain
OP167(official name : OP167 genotype : unc119(ed3); wgIs167(daf-12::TY1 EGFP FLAG; unc119) outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The DAF-12::EGFP fusion protein is expressed in the correct daf-12 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the DAF-12 transcription factor. made_by : S Kim )
developmental stage
L3
genotype
unc119(ed3);wgIs167(daf-12::TY1 EGFP FLAG;unc119)
Sex
hermaphrodite

Metadata from Sequence Read Archive

Library Description


library_name
GSM928358: Snyder_DAF12_GFP_L3_rep1 extraction1_seq1 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer

External Database Query

Logs in read processing pipeline


Number of total reads
4723194
Reads aligned (%)
89.3
Duplicates removed (%)
5.7
Number of peaks
466 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA