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For ce11
BigWig
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BigWig
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For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
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For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: efl-1
wikigenes
PDBj
CellType: L1
ATCC
MeSH
RIKEN BRC
SRX146460
GSM928334: Snyder Pefl1 EFL1 GFP L1 rep1 extraction1 seq1 aliquote 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
efl-1
Cell type
Cell type Class
Larvae
Cell type
L1
NA
NA
Attributes by original data submitter
Sample
source_name
Snyder_Pefl1_EFL1_GFP_L1_rep1
strain
YL424(official name : YL424 genotype : unc-119(ed3); vrIs68[pEFL-1::EFL-1::GFP FLAG: EFL-1 3?UTR genotype : unc-119 (+)] outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : made_by : )
developmental stage
fed L1
genotype
unc-119(ed3); vrIs68[pEFL-1::EFL-1::GFP FLAG: EFL-1 3?UTR
Sex
hermaphrodite
Sequenced DNA Library
library_name
GSM928334: Snyder_Pefl1_EFL1_GFP_L1_rep1 extraction1_seq1 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
4285635
Reads aligned (%)
95.7
Duplicates removed (%)
7.9
Number of peaks
1671 (qval < 1E-05)
ce10
Number of total reads
4285635
Reads aligned (%)
95.6
Duplicates removed (%)
7.9
Number of peaks
1670 (qval < 1E-05)
Base call quality data from
DBCLS SRA