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Colocalization
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For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: dpl-1
wikigenes
PDBj
CellType: Young adult
ATCC
MeSH
RIKEN BRC
SRX146424
GSM928331: Snyder Ppie1 DPL1 GFP YA rep2 extraction2 seq1 aliquote 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
dpl-1
Cell type
Cell type Class
Adult
Cell type
Young adult
NA
NA
Attributes by original data submitter
Sample
source_name
Snyder_Ppie1_DPL1_GFP_YA_rep2
strain
YL390(official name : YL390 genotype : unc119(ed3); vrIs48 [pPIE-1::DPL-1::GFP FLAG: DPL-1 3?UTR genotype : unc-119 (+)] outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : made_by : )
developmental stage
Young Adult
genotype
unc119(ed3); vrIs48 [pPIE-1::DPL-1::GFP FLAG: DPL-1 3?UTR
Sex
hermaphrodite
Sequenced DNA Library
library_name
GSM928331: Snyder_Ppie1_DPL1_GFP_YA_rep2 extraction2_seq1 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
4285296
Reads aligned (%)
33.8
Duplicates removed (%)
26.7
Number of peaks
1086 (qval < 1E-05)
ce10
Number of total reads
4285296
Reads aligned (%)
33.8
Duplicates removed (%)
26.7
Number of peaks
1085 (qval < 1E-05)
Base call quality data from
DBCLS SRA