SRX146418
GSM928325: Snyder Ppie1 EFL1 Input YA rep2 extraction2 seq1 aliquote 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Adult
Cell type
Young adult
NA
NA

Attributes by original data submitter

Sample

source_name
Snyder_Ppie1_EFL1_Input_YA_rep2 extraction1_seq1
strain
YL445(official name : YL445 genotype : unc119(ed3); vrIs81 [pPIE-1::EFL-1::GFP FLAG: EFL-1 3?UTR genotype : unc-119 (+)] outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : made_by : )
developmental stage
Young Adult
genotype
unc119(ed3); vrIs81 [pPIE-1::EFL-1::GFP FLAG: EFL-1 3?UTR
Sex
hermaphrodite

Sequenced DNA Library

library_name
GSM928325: Snyder_Ppie1_EFL1_Input_YA_rep2 extraction2_seq1 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
5513164
Reads aligned (%)
90.2
Duplicates removed (%)
7.0
Number of peaks
523 (qval < 1E-05)

ce10

Number of total reads
5513164
Reads aligned (%)
90.1
Duplicates removed (%)
7.0
Number of peaks
505 (qval < 1E-05)

Base call quality data from DBCLS SRA