Antigen

Antigen Class

TFs and others

Antigen

pros-1

Cell type

Cell type Class

Embryo

Cell type

Embryos

NA

NA

Sample

source_name

Snyder_CEH-26_GFP_LE_rep2

strain

OP500(official name : OP500 genotype : unc119(ed3); wgIs500(ceh-26::TY1 EGFP FLAG; unc119) outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Dresden using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The CEH-26::EGFP fusion protein is expressed in the correct ceh-26 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the CEH-26 transcription factor. made_by : R. Waterston )

developmental stage

late embryo

genotype

unc119(ed3);wgIs500(ceh-26::TY1 EGFP FLAG;unc119)

Sex

hermaphrodite

Sequenced DNA Library

library_name

GSM928323: Snyder_CEH-26_GFP_LE_rep2 extraction2_seq1 aliquote 1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

ce11

Number of total reads

5042449

Reads aligned (%)

46.3

Duplicates removed (%)

15.3

Number of peaks

696 (qval < 1E-05)

ce10

Number of total reads

5042449

Reads aligned (%)

46.3

Duplicates removed (%)

15.3

Number of peaks

620 (qval < 1E-05)