SRX146010
GSM928130: Men1-KO PILECs, Control Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived pancreatic cells
NA
NA

Attributes by original data submitter

Sample

source_name
3.2N Menin-null Embryonic Stem Cells
genetic background
129S6/SvEvTac
genotype
Men1-KO
cell type
ES cells were differentiated into pancreatic islet-like endocrine cells (PILECs)
antibody
input

Sequenced DNA Library

library_name
GSM928130: Men1-KO PILECs, Control Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24402446
Reads aligned (%)
87.7
Duplicates removed (%)
5.2
Number of peaks
432 (qval < 1E-05)

mm9

Number of total reads
24402446
Reads aligned (%)
87.6
Duplicates removed (%)
5.3
Number of peaks
496 (qval < 1E-05)

Base call quality data from DBCLS SRA