SRX146006
GSM928126: Men1-KO ES cells, Control Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
3.2N Menin-null Embryonic Stem Cells
genetic background
129S6/SvEvTac
genotype
Men1-KO
cell type
ES cell
antibody
input

Sequenced DNA Library

library_name
GSM928126: Men1-KO ES cells, Control Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
4947965
Reads aligned (%)
89.5
Duplicates removed (%)
4.1
Number of peaks
233 (qval < 1E-05)

mm9

Number of total reads
4947965
Reads aligned (%)
89.4
Duplicates removed (%)
4.3
Number of peaks
249 (qval < 1E-05)

Base call quality data from DBCLS SRA