SRX145843
GSM927071: RWPE1-ERG ChIP-seq (ERG); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ERG

Cell type

Cell type Class
Prostate
Cell type
RWPE-1
Primary Tissue
Prostate
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
RWPE1-ERG prostate epithelial cell line, ERG ChIP
cell line
RWPE1
cell type
benign prostate epithelial cells
overexpressing
truncated ERG
passages
20
chip antibody
ERG
antibody vendor
Epitomics

Sequenced DNA Library

library_name
GSM927071: RWPE1-ERG ChIP-seq (ERG)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
20269615
Reads aligned (%)
92.2
Duplicates removed (%)
16.0
Number of peaks
5324 (qval < 1E-05)

hg38

Number of total reads
20269615
Reads aligned (%)
92.9
Duplicates removed (%)
15.1
Number of peaks
5053 (qval < 1E-05)

Base call quality data from DBCLS SRA