SRX1458090
GSM1960232: SNU016.input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
SNU-16
Primary Tissue
Stomach
Site of Extraction
Ascites
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
SNU016-input
cell line
SNU016
chip antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
A protocol generated at Myer`s laboratory (http://hudsonalpha.org/myers-lab/protocols) libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24774998
Reads aligned (%)
96.9
Duplicates removed (%)
17.6
Number of peaks
797 (qval < 1E-05)

hg19

Number of total reads
24774998
Reads aligned (%)
95.9
Duplicates removed (%)
19.2
Number of peaks
844 (qval < 1E-05)

Base call quality data from DBCLS SRA