SRX1458082
GSM1960224: AGS.input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
AGS
Primary Tissue
Stomach
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
AGS-input
cell line
AGS
chip antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
A protocol generated at Myer`s laboratory (http://hudsonalpha.org/myers-lab/protocols) libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28170641
Reads aligned (%)
98.0
Duplicates removed (%)
38.6
Number of peaks
747 (qval < 1E-05)

hg19

Number of total reads
28170641
Reads aligned (%)
96.9
Duplicates removed (%)
40.0
Number of peaks
781 (qval < 1E-05)

Base call quality data from DBCLS SRA