Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Bone
Cell type
Chondrocytes
MeSH Description
Polymorphic cells that form cartilage.

Attributes by original data submitter

Sample

source_name
Input DNA for Cre sample
strain
C57BL/6
cell type
Chondrocytes
genotype/variation
hdac3-knockout
transduction
Cre-recombinase adenovirus
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody Libraries were prepared according to NuGene Ultralow library prep kit V2

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
20210279
Reads aligned (%)
98.6
Duplicates removed (%)
6.3
Number of peaks
130 (qval < 1E-05)

mm9

Number of total reads
20210279
Reads aligned (%)
98.5
Duplicates removed (%)
6.6
Number of peaks
113 (qval < 1E-05)

Base call quality data from DBCLS SRA