Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RBPJ

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
LCL cell line
cell line
LCL
cell type
EBV positive B-cells
chip antibody
RBP-jk
chip antibody vendor
Abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq protocol is as described previously (Lu et al, 2010 Virology journal 7, 262). Library was constructed using the TruSeq ChIP Sample Prep kit (Illumina) according to manufacturers instructions

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
58163162
Reads aligned (%)
19.1
Duplicates removed (%)
80.3
Number of peaks
5900 (qval < 1E-05)

hg38

Number of total reads
58163162
Reads aligned (%)
20.0
Duplicates removed (%)
79.5
Number of peaks
5757 (qval < 1E-05)

Base call quality data from DBCLS SRA