SRX145567
GSM925737: LTED INPUT Raw; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Breast
Cell type
MCF-7-LTED
NA
NA

Attributes by original data submitter

Sample

source_name
Long-term estrogen deprived breast cancer cell line
cell line
MCF7-LTED
treatment
Untreated

Sequenced DNA Library

library_name
GSM925737: LTED_INPUT_Raw
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18770860
Reads aligned (%)
93.1
Duplicates removed (%)
41.1
Number of peaks
339 (qval < 1E-05)

hg19

Number of total reads
18770860
Reads aligned (%)
91.5
Duplicates removed (%)
44.1
Number of peaks
375 (qval < 1E-05)

Base call quality data from DBCLS SRA