SRX145566
GSM925736: FAIRE H19 LTED rep2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Breast
Cell type
MCF-7-LTED
NA
NA

Attributes by original data submitter

Sample

source_name
Long-term estrogen deprived breast cancer cell line
cell line
MCF7-LTED
treatment
Untreated

Sequenced DNA Library

library_name
GSM925736: FAIRE_H19_LTED_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
47638460
Reads aligned (%)
89.0
Duplicates removed (%)
41.0
Number of peaks
11424 (qval < 1E-05)

hg19

Number of total reads
47638460
Reads aligned (%)
88.1
Duplicates removed (%)
42.0
Number of peaks
11413 (qval < 1E-05)

Base call quality data from DBCLS SRA