SRX1452794
GSM1954962: H1 TKO ESC H3K9me3 H3K27me3 input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
H1 TKO embryonic stem cells, H3K9me3 H3K27me3 input
strain/background
C57BL/6
cell type
embryonic stem cell line
genotype/variation
H1c, H1d, H1e triple-null
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
TruSeq DNA sample preparation kit (Illumina).

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
20035454
Reads aligned (%)
97.2
Duplicates removed (%)
17.1
Number of peaks
320 (qval < 1E-05)

mm9

Number of total reads
20035454
Reads aligned (%)
96.9
Duplicates removed (%)
17.1
Number of peaks
307 (qval < 1E-05)

Base call quality data from DBCLS SRA