SRX1452780
GSM1954948: H1 TKO ESC H3K4me1 H3K4me3 input R2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
H1 TKO embryonic stem cells, H3K4me1 H3K4me3 input
strain/background
C57BL/6
cell type
embryonic stem cell line
genotype/variation
H1c, H1d, H1e triple-null
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
TruSeq DNA sample preparation kit (Illumina).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22682602
Reads aligned (%)
75.0
Duplicates removed (%)
9.2
Number of peaks
326 (qval < 1E-05)

mm9

Number of total reads
22682602
Reads aligned (%)
74.9
Duplicates removed (%)
9.3
Number of peaks
276 (qval < 1E-05)

Base call quality data from DBCLS SRA