Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
WT embryonic stem cells, H3K4me1 H3K4me3 input
strain/background
C57BL/6
cell type
embryonic stem cell line
genotype/variation
WT
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
TruSeq DNA sample preparation kit (Illumina).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
23898784
Reads aligned (%)
75.7
Duplicates removed (%)
10.4
Number of peaks
335 (qval < 1E-05)

mm9

Number of total reads
23898784
Reads aligned (%)
75.6
Duplicates removed (%)
10.5
Number of peaks
289 (qval < 1E-05)

Base call quality data from DBCLS SRA