Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Epidermis
Cell type
SK-MEL-2
Primary Tissue
Skin
Tissue Diagnosis
Melanoma

Attributes by original data submitter

Sample

source_name
human melanoma cell lines
cell line
SKMEL2
cell type
melanoma
passages
long term culture
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed using the methods of T. I. Lee, S. E. Johnstone, R. A. Young, Chromatin immunoprecipitation and microarray-based analysis of protein location. Nat Protoc. 1, 729–748 (2006). Libraries were prepared using the NEBNext Multiplex Oligos for Illumina kit (NEB) and run on an Illumina Hi-Seq2000.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
25201852
Reads aligned (%)
99.1
Duplicates removed (%)
2.2
Number of peaks
926 (qval < 1E-05)

hg19

Number of total reads
25201852
Reads aligned (%)
98.3
Duplicates removed (%)
3.5
Number of peaks
912 (qval < 1E-05)

Base call quality data from DBCLS SRA