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For mm10
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Embryonic erythroblasts
ATCC
MeSH
RIKEN BRC
SRX145065
GSM923585: PSU ChipSeq Erythrobl Input
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Embryo
Cell type
Embryonic erythroblasts
NA
NA
Attributes by original data submitter
Sample
source_name
Erythrobl
biomaterial_provider
Mitch Weiss lab
lab
PSU-m
lab description
Hardison - Penn State University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
Erythrobl
cell organism
mouse
cell description
Erythroblast, ter119+ cells from liver
cell sex
B
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
age
E14.5
age description
Embryonic day 14.5
control
Input
control description
Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid
wgEncodeEM002350
replicate
1
strain
CD-1
strain description
Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
Sequenced DNA Library
library_name
GSM923585: PSU_ChipSeq_Erythrobl_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
67718270
Reads aligned (%)
97.4
Duplicates removed (%)
7.7
Number of peaks
693 (qval < 1E-05)
mm9
Number of total reads
67718270
Reads aligned (%)
97.2
Duplicates removed (%)
7.7
Number of peaks
804 (qval < 1E-05)
Base call quality data from
DBCLS SRA