SRX145063
GSM923583: PSU ChipSeq Megakaryo Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic megakaryocytes
NA
NA

Attributes by original data submitter

Sample

source_name
Megakaryo
biomaterial_provider
Mitch Weiss lab
lab
PSU-m
lab description
Hardison - Penn State University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
Megakaryo
cell organism
mouse
cell description
Megakaryocyte
cell sex
B
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
age
E14.5
age description
Embryonic day 14.5
control
Input
control description
Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid
wgEncodeEM002352
replicate
1
strain
CD-1
strain description
Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.

Sequenced DNA Library

library_name
GSM923583: PSU_ChipSeq_Megakaryo_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
165922288
Reads aligned (%)
94.6
Duplicates removed (%)
8.2
Number of peaks
961 (qval < 1E-05)

mm9

Number of total reads
165922288
Reads aligned (%)
94.4
Duplicates removed (%)
8.2
Number of peaks
1143 (qval < 1E-05)

Base call quality data from DBCLS SRA