Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Blood
Cell type
G1E
Tissue
Blood
Lineage
cellLine
Description
Gata1- erythroid progenitor

Attributes by original data submitter

Sample

source_name
G1E
biomaterial_provider
Mitch Weiss lab
lab
PSU-m
lab description
Hardison - Penn State University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
G1E
cell organism
mouse
cell description
Gata1- erythroid progenitor
cell sex
M
antibody
CTCF
antibody antibodydescription
rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname
Millipore
antibody vendorid
07-729
age
E0
age description
Embryonic day 0 (stem cell)
control
Input
control description
Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid
wgEncodeEM001916
replicate
1
strain
129
strain description
Strain 129, has widely available embryonic stem cells

Sequenced DNA Library

library_name
GSM923570: PSU_ChipSeq_G1E_CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
45346365
Reads aligned (%)
95.5
Duplicates removed (%)
9.0
Number of peaks
13325 (qval < 1E-05)

mm9

Number of total reads
45346365
Reads aligned (%)
95.3
Duplicates removed (%)
9.0
Number of peaks
13324 (qval < 1E-05)

Base call quality data from DBCLS SRA