Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ORC1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
cervical cancer cell line (low-density fractions)
cell line
HeLa S3
chip antibody
Orc1
chip vendor
polyclonal, gift of Mauro Giacca

Sequenced DNA Library

library_name
GSM922790: Orc1_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
11813354
Reads aligned (%)
38.7
Duplicates removed (%)
56.5
Number of peaks
726 (qval < 1E-05)

hg38

Number of total reads
11813354
Reads aligned (%)
40.1
Duplicates removed (%)
55.2
Number of peaks
652 (qval < 1E-05)

Base call quality data from DBCLS SRA