SRX144063
GSM920946: input ChIP-Seq 1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
RAJI
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

source_name
Raji-cells
cell line
Raji-cells
genotype/variation
Wild-type
cell type
Burkitt's lymphoma
ChIP
Chromatin IP against sonicated genomic DNA

Sequenced DNA Library

library_name
GSM920946: input_ChIP-Seq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
84710835
Reads aligned (%)
86.7
Duplicates removed (%)
36.0
Number of peaks
1351 (qval < 1E-05)

hg19

Number of total reads
84710835
Reads aligned (%)
85.9
Duplicates removed (%)
37.1
Number of peaks
1751 (qval < 1E-05)

Base call quality data from DBCLS SRA