SRX144062
GSM920945: PolII Thr4P ChIP-Seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
RAJI
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

source_name
Raji-cells
cell line
Raji-cells
genotype/variation
Wild-type
cell type
Burkitt's lymphoma
ChIP
Chromatin IP against PolII phosphorylated at Thréonine 4

Sequenced DNA Library

library_name
GSM920945: PolII_Thr4P_ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32684680
Reads aligned (%)
96.0
Duplicates removed (%)
66.0
Number of peaks
864 (qval < 1E-05)

hg19

Number of total reads
32684680
Reads aligned (%)
95.1
Duplicates removed (%)
67.6
Number of peaks
1031 (qval < 1E-05)

Base call quality data from DBCLS SRA