Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Bone
Cell type
Primary bone cells
NA
NA

Attributes by original data submitter

Sample

source_name
tissue
cell type
primary bone cells (generated from surgical waste of bone tissues)
mutation
WT
media
frozen tissues
cell cycle stage
asynchronization
chip antibody
none
spike-in
yeast reference chromatin

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
29880685
Reads aligned (%)
98.4
Duplicates removed (%)
3.6
Number of peaks
427 (qval < 1E-05)

hg19

Number of total reads
29880685
Reads aligned (%)
97.8
Duplicates removed (%)
4.1
Number of peaks
356 (qval < 1E-05)

Base call quality data from DBCLS SRA