Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Gonad
Cell type
Testis
MeSH Description
The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Attributes by original data submitter

Sample

source_name
B6 Input DNA
strain
C57BL/6J
genotype/variation
control
mouse age
4 weeks
tissue
testis
chip antibody
n/a

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted from whole testis after sonication and precipitation with antibody Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit by the service platform of McGill University and genome Quebec Innovation Centre

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
12825239
Reads aligned (%)
92.8
Duplicates removed (%)
9.5
Number of peaks
505 (qval < 1E-05)

mm9

Number of total reads
12825239
Reads aligned (%)
92.6
Duplicates removed (%)
9.7
Number of peaks
547 (qval < 1E-05)

Base call quality data from DBCLS SRA