SRX143855
GSM918763: LICR ChipSeq Spleen Input adult-8wks

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Spleen
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.

Attributes by original data submitter

Sample

source_name
Spleen
biomaterial_provider
1) LICR lab; 2)Stam Lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
biomaterial_type
tissue
donor_id
ENCDO956IXV
cell organism
mouse
tissue_type
Spleen
Sex
male
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
age
adult-8wks
age description
Adult 8 weeks
age
adult-8wks
age description
Adult 8 weeks
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM001459
labversion
07/28/10 Lane 7
replicate
1
softwareversion
ELAND
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM918763: LICR_ChipSeq_Spleen_Input_adult-8wks
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
61167619
Reads aligned (%)
76.7
Duplicates removed (%)
13.1
Number of peaks
957 (qval < 1E-05)

mm9

Number of total reads
61167619
Reads aligned (%)
76.5
Duplicates removed (%)
13.0
Number of peaks
1138 (qval < 1E-05)

Base call quality data from DBCLS SRA