Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic brains
NA
NA

Attributes by original data submitter

Sample

source_name
WholeBrain
biomaterial_provider
1)Stam lab; 2)CSHL lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
biomaterial_type
tissue
donor_id
ENCDO956IXV
cell organism
mouse
tissue_type
Whole Brain
Sex
not determined
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
age
E14.5
age description
Embryonic day 14.5
age
E14.5
age description
Embryonic day 14.5
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM002494
labversion
7/28/10 Lane 4
replicate
1
softwareversion
Bowtie
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM918752: LICR_ChipSeq_WholeBrain_Input_E14.5
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
61654119
Reads aligned (%)
73.2
Duplicates removed (%)
25.7
Number of peaks
787 (qval < 1E-05)

mm9

Number of total reads
61654119
Reads aligned (%)
73.2
Duplicates removed (%)
25.8
Number of peaks
859 (qval < 1E-05)

Base call quality data from DBCLS SRA