Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
MEF
biomaterial_provider
LICR lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
MEF
cell organism
mouse
cell description
Mouse Embryonic Fibroblast
cell sex
M
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
age
adult-8wks
age description
Adult 8 weeks
age
adult-8wks
age description
Adult 8 weeks
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM001456
labversion
03/09/10 Lane 4
replicate
1
softwareversion
ELAND
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM918740: LICR_ChipSeq_MEF_Input_adult-8wks
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
61384580
Reads aligned (%)
83.0
Duplicates removed (%)
10.1
Number of peaks
1358 (qval < 1E-05)

mm9

Number of total reads
61384580
Reads aligned (%)
82.8
Duplicates removed (%)
10.1
Number of peaks
1426 (qval < 1E-05)

Base call quality data from DBCLS SRA