Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Cerebellar Cortex
MeSH Description
The superficial GRAY MATTER of the CEREBELLUM. It consists of two main layers, the stratum moleculare and the stratum granulosum.

Attributes by original data submitter

Sample

source_name
Cortex
biomaterial_provider
1)LICR lab; 2)CSHL lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
Cortex
cell organism
mouse
cell description
Cortex
cell sex
M
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
age
adult-8wks
age description
Adult 8 weeks
age
adult-8wks
age description
Adult 8 weeks
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM001449
labversion
05/26/09 Lane 5
replicate
1
softwareversion
ELAND
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM918732: LICR_ChipSeq_Cortex_Input_adult-8wks
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
43329511
Reads aligned (%)
61.2
Duplicates removed (%)
8.3
Number of peaks
4007 (qval < 1E-05)

mm9

Number of total reads
43329511
Reads aligned (%)
61.1
Duplicates removed (%)
8.3
Number of peaks
4009 (qval < 1E-05)

Base call quality data from DBCLS SRA