Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
Olfactory epithelium
NA
NA

Attributes by original data submitter

Sample

source_name
OlfactBulb
biomaterial_provider
LICR lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
OlfactBulb
cell organism
mouse
cell description
Olfactory Bulb
cell sex
M
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
age
adult-8wks
age description
Adult 8 weeks
age
adult-8wks
age description
Adult 8 weeks
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM002473
labversion
1/5/11 Lane 3
replicate
1
softwareversion
Bowtie
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM918714: LICR_ChipSeq_OlfactBulb_Input_adult-8wks
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
36256144
Reads aligned (%)
93.1
Duplicates removed (%)
12.8
Number of peaks
762 (qval < 1E-05)

mm9

Number of total reads
36256144
Reads aligned (%)
92.9
Duplicates removed (%)
12.9
Number of peaks
871 (qval < 1E-05)

Base call quality data from DBCLS SRA