Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

MEL

Tissue

Blood

Lineage

cellLine

Description

Leukemia (K562 analog)

Sample

source_name

MEL

biomaterial_provider

Weissman lab

lab

LICR-m

lab description

Ren - Ludwig Institue for Cancer Research

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

line

MEL

cell organism

mouse

cell description

Leukemia (K562 analog)

cell sex

M

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

age

immortalized

biomaterial_type

immortalized cell line

age

immortalized

biomaterial_type

immortalized cell line

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEM002652

labversion

6/8/2011 Lane 5-1

replicate

1

softwareversion

Bowtie

strain

C57BL/6

strain description

C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name

ERROR: cannot retrieve data from NCBI: too many requests

library_strategy

ERROR: cannot retrieve data from NCBI: too many requests

library_source

ERROR: cannot retrieve data from NCBI: too many requests

library_selection

ERROR: cannot retrieve data from NCBI: too many requests

library_construction_protocol

ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model

ERROR: cannot retrieve data from NCBI: too many requests

cycle_sequence

ERROR: cannot retrieve data from NCBI: too many requests

cycle_count

ERROR: cannot retrieve data from NCBI: too many requests

flow_sequence

ERROR: cannot retrieve data from NCBI: too many requests

flow_count

ERROR: cannot retrieve data from NCBI: too many requests

key_sequence

ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads

20618464

Reads aligned (%)

96.2

Duplicates removed (%)

8.9

Number of peaks

663 (qval < 1E-05)

mm9

Number of total reads

20618464

Reads aligned (%)

96.0

Duplicates removed (%)

9.0

Number of peaks

745 (qval < 1E-05)