SRX1435941
GSM1943549: PLZF Chipseq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZBTB16

Cell type

Cell type Class
Uterus
Cell type
Endometrial stromal cells
NA
NA

Attributes by original data submitter

Sample

source_name
PLZF ChIP DNA from hESCs
cell type
Primary stromal cells
passage
2 to 4
antibody
Goat polyclonal anti-human PLZF antibody (sc-11146; Santa Cruz Biotechnology, Inc.)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and PLZF bound DNA was isolated with antibody.

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36194552
Reads aligned (%)
98.2
Duplicates removed (%)
34.7
Number of peaks
1654 (qval < 1E-05)

hg19

Number of total reads
36194552
Reads aligned (%)
97.4
Duplicates removed (%)
35.7
Number of peaks
1743 (qval < 1E-05)

Base call quality data from DBCLS SRA