Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Human breast cancer cell line
cell line
MCF7

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Hi-C was sequenced using PE100 reads; RNA-seq and ChIP-seq were sequenced using SE100 reads by using a HiSeq 2000 instrument

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
29734121
Reads aligned (%)
94.1
Duplicates removed (%)
89.3
Number of peaks
770 (qval < 1E-05)

hg19

Number of total reads
29734121
Reads aligned (%)
93.5
Duplicates removed (%)
90.4
Number of peaks
750 (qval < 1E-05)

Base call quality data from DBCLS SRA