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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27me3
wikigenes
PDBj
CellType: Kc167
ATCC
MeSH
RIKEN BRC
SRX143463
GSM919425: H3K27me3 CTCF knockdown ChIPseq; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27me3
Cell type
Cell type Class
Cell line
Cell type
Kc167
Source
e/se
Developmental Stage
dorsal closure stage
Attributes by original data submitter
Sample
source_name
Kc cells
chip antibody
H3K27me3 Millipore Cat. # 07-449 Lot # JBC1924326
cell type
Kc167 Drosophila Embryonic Cell line
Sequenced DNA Library
library_name
GSM919425: H3K27me3_CTCF_knockdown_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
8952456
Reads aligned (%)
40.9
Duplicates removed (%)
77.5
Number of peaks
453 (qval < 1E-05)
dm3
Number of total reads
8952456
Reads aligned (%)
41.1
Duplicates removed (%)
74.8
Number of peaks
905 (qval < 1E-05)
Base call quality data from
DBCLS SRA