SRX143463
GSM919425: H3K27me3 CTCF knockdown ChIPseq; Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Cell line
Cell type
Kc167
Source
e/se
Developmental Stage
dorsal closure stage

Attributes by original data submitter

Sample

source_name
Kc cells
chip antibody
H3K27me3 Millipore Cat. # 07-449 Lot # JBC1924326
cell type
Kc167 Drosophila Embryonic Cell line

Sequenced DNA Library

library_name
GSM919425: H3K27me3_CTCF_knockdown_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
8952456
Reads aligned (%)
40.9
Duplicates removed (%)
77.5
Number of peaks
453 (qval < 1E-05)

dm3

Number of total reads
8952456
Reads aligned (%)
41.1
Duplicates removed (%)
74.8
Number of peaks
905 (qval < 1E-05)

Base call quality data from DBCLS SRA