Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease

Attributes by original data submitter

Sample

source_name
MCF10A
cell line
non-tumorigenic epithelial cell line MCF 10A
chip antibody
normal rabbit IgG (Santa Cruz, sc2027)

Sequenced DNA Library

library_name
GSM917817: IgG
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
19365911
Reads aligned (%)
96.9
Duplicates removed (%)
22.2
Number of peaks
831 (qval < 1E-05)

hg19

Number of total reads
19365911
Reads aligned (%)
96.0
Duplicates removed (%)
24.1
Number of peaks
1056 (qval < 1E-05)

Base call quality data from DBCLS SRA