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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: SPI1
wikigenes
PDBj
CellType: K-562
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1431733
GSM1940194: K562 DMSO Vehicle Control PU.1 ChIP-seq Rep 1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
SPI1
Cell type
Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous
Attributes by original data submitter
Sample
source_name
K562 DMSO Vehicle Control PU.1 ChIP-seq
cell line
K562
cell type
myelogenous leukemia cell line
treated with
0.01% DMSO vehicle
duration of treatment
72 hours
chip antibody
rabbit anti-PU.1
chip antibody vendor
Santa Cruz Biotech
Sequenced DNA Library
library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests
Sequencing Platform
instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
14412971
Reads aligned (%)
95.7
Duplicates removed (%)
2.2
Number of peaks
2148 (qval < 1E-05)
hg19
Number of total reads
14412971
Reads aligned (%)
94.6
Duplicates removed (%)
3.5
Number of peaks
2103 (qval < 1E-05)
Base call quality data from
DBCLS SRA