Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SPI1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562 DMSO Vehicle Control PU.1 ChIP-seq
cell line
K562
cell type
myelogenous leukemia cell line
treated with
0.01% DMSO vehicle
duration of treatment
72 hours
chip antibody
rabbit anti-PU.1
chip antibody vendor
Santa Cruz Biotech

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
14412971
Reads aligned (%)
95.7
Duplicates removed (%)
2.2
Number of peaks
2148 (qval < 1E-05)

hg19

Number of total reads
14412971
Reads aligned (%)
94.6
Duplicates removed (%)
3.5
Number of peaks
2103 (qval < 1E-05)

Base call quality data from DBCLS SRA