Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Cardiovascular
Cell type
HAEC
Primary Tissue
Aorta
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HAEC_H3K9Me3_500nM TSA_12h
cell line
HAEC
cell type
Primary Human Aortic Endothelial Cells
passages
Passage 4-6
chip antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM916981: HAEC H3K9Me3 TSA3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
23758528
Reads aligned (%)
98.3
Duplicates removed (%)
5.5
Number of peaks
1584 (qval < 1E-05)

hg19

Number of total reads
23758528
Reads aligned (%)
96.8
Duplicates removed (%)
8.0
Number of peaks
1464 (qval < 1E-05)

Base call quality data from DBCLS SRA