SRX143110
GSM916965: HAEC H3K9Me3 control1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Cardiovascular
Cell type
HAEC
Primary Tissue
Aorta
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HAEC_H3K9Me3_control
cell line
HAEC
cell type
Primary Human Aortic Endothelial Cells
passages
Passage 4-6
chip antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM916965: HAEC H3K9Me3 control1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24575016
Reads aligned (%)
91.5
Duplicates removed (%)
5.6
Number of peaks
1543 (qval < 1E-05)

hg19

Number of total reads
24575016
Reads aligned (%)
90.3
Duplicates removed (%)
7.8
Number of peaks
1504 (qval < 1E-05)

Base call quality data from DBCLS SRA