SRX142912
GSM916553: Input DNA; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
trophoblast stem cells
cell type
Blastocyst derived trophoblast stem cells
chip antibody
none
genotype
wild type

Sequenced DNA Library

library_name
GSM916553: Input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
51318951
Reads aligned (%)
95.9
Duplicates removed (%)
36.9
Number of peaks
766 (qval < 1E-05)

mm9

Number of total reads
51318951
Reads aligned (%)
95.7
Duplicates removed (%)
37.0
Number of peaks
888 (qval < 1E-05)

Base call quality data from DBCLS SRA