Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP
cell line
LNCaP
genotype/variation
FoxA1 knockdown
chip antibody
anti-AR
chip antibody vendor
Millipore

Sequenced DNA Library

library_name
GSM916522: LNCaP_shFoxA1_regular_medium_AR
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
8816568
Reads aligned (%)
47.3
Duplicates removed (%)
37.6
Number of peaks
4283 (qval < 1E-05)

hg38

Number of total reads
8816568
Reads aligned (%)
48.3
Duplicates removed (%)
36.7
Number of peaks
4207 (qval < 1E-05)

Base call quality data from DBCLS SRA