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BigWig
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For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: E2f4
wikigenes
PDBj
CellType: C2C12
ATCC
MeSH
RIKEN BRC
SRX142538
GSM915187: Caltech ChipSeq C2C12 E2F4 Control 50bp EqS 2.0pct 60hr
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
E2f4
Cell type
Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS
Attributes by original data submitter
Sample
source_name
C2C12
biomaterial_provider
Barbara Wold lab
lab
Caltech-m
lab description
Wold - Califonia Institute of Technology
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
C2C12
cell organism
mouse
cell description
Myoblast cell line derived from thigh muscle of C3H mice after crush injury
cell sex
F
antibody
E2F4
antibody description
rabbit polyclonal. Antibody Target: E2F4
antibody targetdescription
mapping at the C-terminus of E2F4 of human origin
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-866
control
Control_50bp
control description
This data represents a control being compared to experiments using read length of 50 bp
treatment
EqS_2.0pct_60hr
treatment description
60 h with 2.0% Equine Serum and Insulin (Wold)
age
immortalized
age description
Immortal cells
control
Control_50bp
control description
This data represents a control being compared to experiments using read length of 50 bp
controlid
11610
labexpid
11718
labversion
Myocyte
labversion description
Myocyte
replicate
1
strain
C3H
strain description
Strain C3H, Very related to C57BL/6
Sequenced DNA Library
library_name
GSM915187: Caltech_ChipSeq_C2C12_E2F4_Control_50bp_EqS_2.0pct_60hr
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
22238107
Reads aligned (%)
86.1
Duplicates removed (%)
43.2
Number of peaks
4663 (qval < 1E-05)
mm9
Number of total reads
22238107
Reads aligned (%)
86.0
Duplicates removed (%)
43.3
Number of peaks
4613 (qval < 1E-05)
Base call quality data from
DBCLS SRA